For example, great Paul Gilbert and yet another great John Petrucci use this "barresque" (great explanation man) and they're cool about it...
If it feels pain, drop it. If not, and you still want to get rid of it you'll have to turn that distortion off, because you've probably developed this type of "rude" index finger behavior for filtering unwanted overall noise produced by non-played strings while playing single note solo... I use it sometimes also, sometimes I mute with some other flash from my fingers, palm etc... it all depends on a musical idea.
I think it's cool to have the control over it, when to do it, and when not.
Pebber explained muting stuff perfectly. Something like... muting of non-played strings is done with any flesh of both hands available dictated by particular musical situation...